PRJNA392919 - Multi-tissue

Summary
Resource Type
Analysis
Name
PRJNA392919 - Multi-tissue
Description

"Project that aimed to unveil and release the genome of the cork oak tree"

FASTQ files were obtained from the NCBI database using the SRAtoolkit-2.9.4. Mapping to the reference genome of Q.suber (NCBI Sequence Read Archive SRP111728 (2017)) was performed using HISAT2-2.1.0 and gene expression in TPM (transcripts per million) was calculated using the counts obtained from featureCounts included in SubRead-v1.6.3.

Program, Pipeline, Workflow or Method Name
PRJNA392919 - Multi-tissue
Program Version
HISAT2-2.1.0, SRAtoolkit-2.9.4, SubRead-v1.6.3
Date Performed
Monday, September 9, 2019 - 15:21
Data Source
BioSamples
NameTissueTreatmentDescription
SRX3142621PhellemNot setThis biomaterial: SRX3142621, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142620XylemNot setThis biomaterial: SRX3142620, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142619LeavesNot setThis biomaterial: SRX3142619, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142618InnerbarkNot setThis biomaterial: SRX3142618, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142617PollenNot setThis biomaterial: SRX3142617, was created for the analysis: PRJNA392919 - Multi-tissue