PRJNA318475 - Cork (suber x ilex)

Summary
Resource Type
Analysis
Name
PRJNA318475 - Cork (suber x ilex)
Description

"Transcriptomic analysis of the cork bark of Quercus suber and Quercus ilex"

FASTQ files were obtained from the NCBI database using the SRAtoolkit-2.9.4. Tags were removed using TagCleaner-0.16 and high quality reads were filtered using Trimmomatic-0.38. Mapping to the reference genome of Q.suber (NCBI Sequence Read Archive SRP111728 (2017)) was performed using Gmap-2018-07-04 and gene expression in TPM (transcripts per million) was calculated using the counts obtained from featureCounts included in SubRead-v1.6.3.

Program, Pipeline, Workflow or Method Name
PRJNA318475 - Cork
Program Version
Gmap-2018-07-04, SRAtoolkit-2.9.4, SubRead-v1.6.3, TagCleaner-0.16, Trimmomatic-0.38
Date Performed
Monday, September 9, 2019 - 15:21
Data Source
BioSamples
NameTissueTreatmentDescription
SRS1396886PhellemNot setThis biomaterial: SRS1396886, was created for the analysis: PRJNA318475 - Cork (suber x ilex)