PRJNA275997 - Roots (drought conditions)

Summary
Resource Type
Analysis
Name
PRJNA275997 - Roots (drought conditions)
Description

"Sequences from 3 different libraries, concerning 3 different water regiments."

FASTQ files were obtained from the NCBI database using the SRAtoolkit-2.9.4. Tags were removed using TagCleaner-0.16 and high quality reads were filtered using Trimmomatic-0.38. Mapping to the reference genome of Q.suber (NCBI Sequence Read Archive SRP111728 (2017)) was performed using Gmap-2018-07-04 and gene expression in TPM (transcripts per million) was calculated using the counts obtained from featureCounts included in SubRead-v1.6.3.

Program, Pipeline, Workflow or Method Name
PRJNA275997 - Roots (drought conditions)
Program Version
Gmap-2018-07-04, SRAtoolkit-2.9.4, SubRead-v1.6.3, TagCleaner-0.16, Trimmomatic-0.38
Date Performed
Wednesday, April 10, 2019 - 10:03
Data Source
BioSamples
NameTissueTreatmentDescription
SRS851887RootMedium drought conditionsThis biomaterial: SRS851887, was created for the analysis: PRJNA275997 - Roots (drought conditions)
SRS851883RootSevere drought conditionsThis biomaterial: SRS851883, was created for the analysis: PRJNA275997 - Roots (drought conditions)
SRS851885RootWell watered conditionsThis biomaterial: SRS851885, was created for the analysis: PRJNA275997 - Roots (drought conditions)