PRJNA318475 - Cork (suber x ilex)

BioSamples
Cross Reference
Publication
Summary
BioSamples
NameTissueTreatmentDescription
SRS1396886phellemNot setThis biomaterial: SRS1396886, was created for the analysis: PRJNA318475 - Cork (suber x ilex)
Publication
Boher P, Soler M, Sánchez A, Hoede C, Noirot C, Paiva JAP, Serra O, Figueras M. A comparative transcriptomic approach to understanding the formation of cork.. Plant molecular biology. 2018 Jan; 96(1-2):103-118.
Summary
Name
PRJNA318475 - Cork (suber x ilex)
Description

"Transcriptomic analysis of the cork bark of Quercus suber and Quercus ilex"

FASTQ files were obtained from the NCBI database using the SRAtoolkit-2.9.4. Tags were removed using TagCleaner-0.16 and high quality reads were filtered using Trimmomatic-0.38. Mapping to the reference genome of Q.suber (NCBI Sequence Read Archive SRP111728 (2017)) was performed using Gmap-2018-07-04 and gene expression in TPM (transcripts per million) was calculated using the counts obtained from featureCounts included in SubRead-v1.6.3.
Program, Pipeline, Workflow or Method Name
PRJNA318475 - Cork (suber x ilex)
Program Version
GMAP-2018-07-04, SRAtoolkit-2.9.4, SubRead-v1.6.3, TagCleaner-0.16, Trimmomatic-0.38
Data Source
Source Name
: PRJNA318475
Source URI
: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA318475