SRP002613 - Good/Bad Cork

SRS083080phellogenNot setThis biomaterial: SRS083080, was created for the analysis: SRP002613 - Good/Bad Cork
SRS083081phellogenNot setThis biomaterial: SRS083081, was created for the analysis: SRP002613 - Good/Bad Cork
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Paiva, J.A., Fevereiro, P., Marques, P. et al. Deciphering cork formation in Quercus suber. BMC Proc 5, P172 (2011).
SRP002613 - Good/Bad Cork

FASTQ files were obtained from the NCBI database using the SRAtoolkit-2.9.4. Tags were removed using TagCleaner-0.16 and high quality reads were filtered using Trimmomatic-0.38. Mapping to the reference genome of Q.suber (NCBI Sequence Read Archive SRP111728 (2017)) was performed using Gmap-2018-07-04 and gene expression in TPM (transcripts per million) was calculated using the counts obtained from featureCounts included in SubRead-v1.6.3.

Program, Pipeline, Workflow or Method Name
SRP002613 - Good/Bad Cork
Program Version
GMAP-2018-07-04, SRAtoolkit-2.9.4, SubRead-v1.6.3, TagCleaner-0.16, Trimmomatic-0.38
Data Source
Source Name
: SRP002613
Source URI