PRJNA392919 - Multi-tissue

BioSamples
Cross Reference
Publication
Summary
BioSamples
NameTissueTreatmentDescription
SRX3142617pollenNot setThis biomaterial: SRX3142617, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142618phellodermNot setThis biomaterial: SRX3142618, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142619leafNot setThis biomaterial: SRX3142619, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142620xylemNot setThis biomaterial: SRX3142620, was created for the analysis: PRJNA392919 - Multi-tissue
SRX3142621phellemNot setThis biomaterial: SRX3142621, was created for the analysis: PRJNA392919 - Multi-tissue
Publication
Ramos AM, Usié A, Barbosa P, Barros PM, Capote T, Chaves I, Simões F, Abreu I, Carrasquinho I, Faro C, Guimarães JB, Mendonça D, Nóbrega F, Rodrigues L, Saibo NJM, Varela MC, Egas C, Matos J, Miguel CM, Oliveira MM, Ricardo CP, Gonçalves S. The draft genome sequence of cork oak.. Scientific data. 2018 05 22; 5:180069.
Summary
Name
PRJNA392919 - Multi-tissue
Description

"Project that aimed to unveil and release the genome of the cork oak tree"

FASTQ files were obtained from the NCBI database using the SRAtoolkit-2.9.4. Mapping to the reference genome of Q.suber (NCBI Sequence Read Archive SRP111728 (2017)) was performed using HISAT2-2.1.0 and gene expression in TPM (transcripts per million) was calculated using the counts obtained from featureCounts included in SubRead-v1.6.3.
Program, Pipeline, Workflow or Method Name
PRJNA392919 - Multi-tissue
Program Version
HISAT2-2.1.0, SRAtoolkit-2.9.4, SubRead-v1.6.3
Data Source
Source Name
: PRJNA392919
Source URI
: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA392919